I have a Master Identity key (which is detached from my daily-use keyring) and both encryption and signing subkeys (all are RSA). I sign documents with the signing subkey: GnuPG selects this key ...
gpg2 generates keys with one or several of the (S)igning, (E)ncryption, (C)ertification usages set. However, e.g. Enigmail creates a primary key also set for (A)uthentication, which GnuPG then shows. ...