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You can use Wireshark to extract conversation statistics from the packet captures. This information can then be sorted through to determine which ports are used regularly: This screen is from the Wireshark Statistics->Conversations menu items. It also has a "Copy" button which will allow you to get this data as CSV; you could then extract destination ...


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I don't know if i understand your question well enough, but to me this sounds like all you really want is to open the pcapng-file(s) in Wireshark. Maybe my answer is totally off the track. If this is the case, please specify your question further.


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OWASP Testing guide is your friend. In case a checklist is enough you might go through The OWASP Application Security Verification Standard



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