I am currently looking into ways of securing a number of E-Commerce websites which serve a large amount of traffic every day.
So far we have implemented WAF's (Web Application Firewall), SSL certificates, malware detection (using a range of different software) and also made changes to the E-Commerce software which will make breaching the site harder (changing admin URLs etc).
An idea was given to me by a co-worker which would be to check the MD5Sum of each and every file within the E-Commerce software. My Question is: Is this something which is achievable/worth doing and if so, how would I go about MD5Summing 10k+ files on each site?